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You can increase the Java heap space (set by the Job Scheduler when starting the Java VM) within the configuration file factory.ini, for example:java
options -Xmx512m
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[java]
options = -Xmx512m
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For possible java vm options please see java VM documention http://download.oracle.com/javase/1.5.0/docs/tooldocs/windows/java.html#options